Software package Associated publication
abcdeFBA
a-c-o-r-n Sroka, et al.
anNET Zamboni, et al.
BioMet Toolbox Cvijovic, et al.
CellNetAnalyzer Klamt, et al.
Cobra toolbox Schellenberger, et al.
CycSim Le Fevre, et al.
efmtool Latendresse, et al.
Elementary flux pattern analyzer (EFPA)
FAME, the Flux Analysis and Modeling Environment Boele et al.
FASIMU Hoppe, et al.
FBA-SimVis Grafahrend-Belau, et al.
GEMSiRV Liao, et al.
iMAT Zur, et al.
Metabolica Heino, et al.
MetaFlux Latendresse, et al.
MetaFluxNet Lee, et al.
MetaNET Narang, et al.
Metatool Kamp and Schuster
MicrobesFlux Feng, et al.
Omix Droste, et al.
OptFlux Rocha, et al.
SNA Urbanczik
SurreyFBA Gevorgyan, et al.
Sybil Gelius-Dietrich
The Systems Biology Research Tool Wright and Wagner
TIGER Jensen, et al.
WEbcoli Jung, et al.
Yana Schwarz, et al.
YanaSquare Schwarz, et al.